PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_14800V3.9.p
Common NameHAP3B
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YB
Protein Properties Length: 219aa    MW: 23775.6 Da    PI: 6.396
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_14800V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB188.16.2e-5933129197
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdrflPianvsrimkk+lP+nakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre
  Pp3c9_14800V3.9.p  33 VREQDRFLPIANVSRIMKKALPSNAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 124
                        69****************************************************************************************** PP

              NF-YB  93 legek 97 
                        legek
  Pp3c9_14800V3.9.p 125 LEGEK 129
                        ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5629144IPR009072Histone-fold
SuperFamilySSF471135.43E-4236144IPR009072Histone-fold
PfamPF008084.1E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-216785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-2186104No hitNo description
PRINTSPR006151.5E-21105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADSYGHNAG SPESSPHSDN ESGGHYRDQD ASVREQDRFL PIANVSRIMK KALPSNAKIS  60
KDAKETVQEC VSEFISFITG EASDKCQREK RKTINGDDLL WAMSTLGFED YVEPLKVYLH  120
KYRELEGEKA STAKGGDQQG GKEGSQGVMG SMGMSGGMNG MNGTMNGNMH GHGIPVSMQM  180
LQQSYGQQAP PGMMYSPHQM MPQYQMPMQS GGNQPRGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4833124192Transcription factor HapC (Eurofung)
4g92_B1e-4833124192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.89030.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001781393.11e-110predicted protein
SwissprotO233101e-73NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0I9QQM21e-162A0A0I9QQM2_PHYPA; CCAAT-box binding factor HAP3-like protein
STRINGPP1S302_35V6.11e-162(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-74nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Xie Z, et al.
    Duplication and functional diversification of HAP3 genes leading to the origin of the seed-developmental regulatory gene, LEAFY COTYLEDON1 (LEC1), in nonseed plant genomes.
    Mol. Biol. Evol., 2008. 25(8): p. 1581-92
    [PMID:18453547]